| Organism | Details | Investigations | Treatment | 
|---|
| SARS-CoV-2. COVID-19 | Highly infectious coronavirus. Continuous Cough, loss of taste/smell, fever and fatigue. High risk co-morbidity, the elderly, the immunosuppressed and the obese. In the UK, black, Asian and ethnic minority (BAME) | COVID test, CXR shows bilateral changes, CT shows bilateral ground glass opacities. | High flow oxygen, VTE prophylaxis. Dexamethasone and Anti-virals, e.g. remdesivir. Some need ITU and ventilation and proning. | 
| Streptococcus
pneumoniae | Commonest. 70%. Middle aged. Cough with green/rusty sputum, fever, pleurisy. Associated HSV cold sores. Main cause of lobar pneumonia. Cavities with serotype 3 | Sputum, blood and urine - pneumococcal antigen | Penicillin (if allergic, Erythromycin) e.g., Treat with Benzyl Penicillin 1-2 g 6 hrly | 
| Mycoplasma pneumoniae | Children and young adults. Autumnal and 3–4-year epidemic cycle atypical pneumonia - cough
and sputum absent in 1/3 cases. Preceding flu-like symptoms usually, e.g. headache, myalgia, GI upset before onset of respiratory symptoms Myocarditis, pericarditis, erythema multiforme, haemolytic anaemia, myalgia, arthralgia, meningo-encephalitis, cold agglutinins | Serology for IgM and IgG antibodies (acute and convalescent titres), cold agglutinins (in 50%). | Erythromycin, Azithromycin, Clarithromycin or
doxycycline | 
| Haemophilus influenzae | Especially seen in the
elderly, heavy smokers and COPD patients | No specific features; may be broncho- or lobar pneumonia | Cefuroxime or Co-Amoxiclav | 
| Moraxella catarrhalis | Common cause of bronchopneumonia especially in the
elderly and COPD patients | No specific features; may be broncho- or lobar
pneumonia | Cefuroxime or Co-Amoxiclav | 
| Staphylococcus aureus | More common following influenza pneumonia, IV drug, central line Severe pneumonia, post-influenza maybe rapidly fatal. Abscess formation, pneumothorax, empyema
relatively common. Septicaemia: infective emboli causing abscesses in other organs. | Nodular consolidation and
cavitation on CXR. | Flucloxacillin | 
| Chlamydia psittaci 'Psittacosis' | Acquired from avian excreta seen in those exposed to birds. Malaise, high fever, dry cough,
hepatosplenomegaly and rose spots on the abdomen.
Hepatitis, encephalitis, renal
failure. Hepatosplenomegaly. | Serology for Chlamydia antibodies -
complement-fixing
antibodies (immunofluorescent
tests to
distinguish types). | Erythromycin,
Azithromycin,
Clarithromycin or
Doxycycline | 
| Chlamydophila
pneumoniae | Causes 5-10% of
community-acquired
Often mild flu-like illness or
acute bronchitis recovering
spontaneously. Pneumonia
also usually mild | CXR:Segmental Infiltrates, Acute and convalescent sera | Erythromycin,
Azithromycin,
Clarithromycin or
doxycycline | 
| Coxiella burnetii
(Q fever) | Only 1% of cases overall Influenza-like illness which
causes pneumonia if it
persists, often with
multiple CXR lesions
Endocarditis. If untreated
chronic infection is fatal | Serology - complement
fixing antibody. CXR: Multiple segmental shadows | Erythromycin,
Azithromycin,
Clarithromycin or
doxycycline
Hypoalbuminaemia and
abnormal LFTs (raised
transaminases) are
common.
Acute renal failure. | 
| Legionella
pneumophilia | Infection from water
system. Sporadic cases source unknown. Middle-aged and older, Recent travel, Autumn time. Outbreaks in immunocompromised
individuals. x 2 in Males. Usually, 2-10 day prodromal of dry cough, confusion, headache, myalgia
or diarrhoea, low WCC, Low Na, abnormal LFTs. CR shadows. | Urine for specific antigen. Immunofluorescent
tests on sputum or
bronchial lavage. | Erythromycin,
Azithromycin,
Clarithromycin or
Ciprofloxacin +/?
rifampicin Despite
these mortality
?20% | 
| Klebsiella | Elderly with a history of
heart or lung disease,
diabetes, alcohol
excess or malignancy
Sudden onset, severe
systemic upset, purulent,
mucoid sputum
(Classically redcurrant
jelly). Lobar pneumonia | CXR: cavitating lesions
- lung abscesses
Extensive lobar
consolidation with
cavitation. Widespread consolidation (upper lobes) | Cefuroxime and
Gentamicin | 
| Pseudomonas
aeruginosa | Nosocomial, cystic fibrosis and
neutropenic patients. | Sputum and blood culture | but it does colonise the
upper airway as a
commensal
Ciprofloxacin or
ceftazidime
Anaerobes -
Bacteroides
Aspiration, e.g. due to
stroke. Diabetics
Metronidazole | 
| Pneumocystis
jiroveci (PCP)
(Previously
Pneumocystis
carinii) | The most common
opportunistic
infection in AIDS
(CD4 count
<200/mm3) and
immunosuppressed
patients
High fever, dry cough,
shortness of breath,
tachycardia. Marked
hypoxia, particularly
following exertion. Fine
crackles or nothing to
find on auscultation.
Mortality now 10% | Typical CXR - perihilar
'butterfly' ground glass
shadowing. but may be
normal in early disease.
CT shows ground-glass
shadowing, bronchial
lavage or induced
sputum for diagnosis by
silver staining or by
immunofluorescence | Long-term prophylaxis is
required, e.g. with
co-trimoxazole
Hi-dose i.v.
cotrimoxazole or
i.v. pentamidine | 
| Viral Pneumonia | Influenza, Parainfluenza, Measles, RSV in infants, Varicella can cause severe pneumonia with multiple miliary nodular shadows which may calcify | Relevant serology | Consider Neuraminidase inhibitors if Influenza |